1KFT Dna Binding Protein date Nov 23, 2001
title Solution Structure Of The C-Terminal Domain Of Uvrc From E-C
authors S.Singh, G.E.Folkers, A.M.J.J.Bonvin, R.Boelens, R.Wechselberger A.Niztayev, R.Kaptein
compound source
Molecule: Excinuclease Abc Subunit C
Chain: A
Fragment: Hhh Domain(C-Terminal Domain)
Synonym: Uvrc
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: De3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)-P-Lys-S
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet13b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and DNA-binding properties of the C-terminal domain of UvrC from E.coli., Singh S, Folkers GE, Bonvin AM, Boelens R, Wechselberger R, Niztayev A, Kaptein R, EMBO J 2002 Nov 15;21(22):6257-66. PMID:12426397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (1kft.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1KFT
  • Original NMR restraints for 1KFT from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KFT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KFT from S2C, [Save to disk]
    • View 1KFT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KFT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KFT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kfta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kft_A] [1kft]
  • SWISS-PROT database: [P0A8G0]
  • Domain organization of [UVRC_ECOLI] by SWISSPFAM
  • Domain found in 1KFT: [HhH1 ] by SMART
    • Other resources with information on 1KFT
  • Community annotation for 1KFT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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