1KZZ	Signaling Protein	date	Feb 08, 2002
title	Downstream Regulator Tank Binds To The Cd40 Recognition Site
authors	C.Li, C.Z.Ni, M.L.Havert, E.Cabezas, J.He, D.Kaiser, J.C.Reed, A.C.Satterthwait, G.Cheng, K.R.Ely
compound		source
Molecule: Tnf Receptor Associated Factor 3 Chain: A Fragment: Residues 377-568 Synonym: Traf3, Cd40 Receptor Associated Factor 1, Craf1, C Binding Protein, Cd40bp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Traf Family Member-Associated Nf-Kappa-B Activato Chain: B Fragment: Residues 177-187 Synonym: Tank, Traf-Interacting Protein, I-Traf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 3 2 1	R_factor 0.225 R_Free 0.307
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.500 82.500 77.900 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.50 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Downstream regulator TANK binds to the CD40 recognition site on TRAF3., Li C, Ni CZ, Havert ML, Cabezas E, He J, Kaiser D, Reed JC, Satterthwait AC, Cheng G, Ely KR, Structure (Camb) 2002 Mar;10(3):403-11. PMID:12005438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (1kzz.pdb1.gz) 32 Kb Biological Unit Coordinates (1kzz.pdb2.gz) 95 Kb CSU: Contacts of Structural Units for 1KZZ Likely Quarternary Molecular Structure file(s) for 1KZZ Retrieve 1KZZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KZZ from S2C, [Save to disk]

View 1KZZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KZZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KZZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kzza2, region A:313-349 [Jmol] [rasmolscript] [script source]     - Domain d1kzza1, region A:350-504 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1kzz] [1kzz_B] [1kzz_A] SWISS-PROT database: [Q92844] [Q13114] Domain organization of [TANK_HUMAN] [TRAF3_HUMAN] by SWISSPFAM Domain found in 1KZZ: [MATH ] by SMART

Other resources with information on 1KZZ

Community annotation for 1KZZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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