1M9S Signaling Protein date Jul 29, 2002
title Crystal Structure Of Internalin B (Inlb), A Listeria Monocyt Virulence Protein Containing Sh3-Like Domains.
authors M.Marino, M.Banerjee, R.Jonquieres, P.Cossart, P.Ghosh
compound source
Molecule: Internalin B
Chain: A
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Gene: Inlb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: T7
Expression_system_plasmid: Pet28b
symmetry Space Group: C 2 2 21
R_factor 0.273 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.500 330.900 182.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand SO4, TB enzyme
related structures by homologous chain: 1OTN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGW domains of the Listeria monocytogenes invasion protein InlB are SH3-like and mediate binding to host ligands., Marino M, Banerjee M, Jonquieres R, Cossart P, Ghosh P, EMBO J 2002 Nov 1;21(21):5623-34. PMID:12411480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1m9s.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 1M9S
  • CSU: Contacts of Structural Units for 1M9S
  • Likely Quarternary Molecular Structure file(s) for 1M9S
  • Structure Factors (315 Kb)
  • Retrieve 1M9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M9S from S2C, [Save to disk]
  • Re-refined 1m9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M9S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M9S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m9sa1, region A:241-319 [Jmol] [rasmolscript] [script source]
        - Domain d1m9sa5, region A:36-240 [Jmol] [rasmolscript] [script source]
        - Domain d1m9sa2, region A:391-465 [Jmol] [rasmolscript] [script source]
        - Domain d1m9sa3, region A:466-551 [Jmol] [rasmolscript] [script source]
        - Domain d1m9sa4, region A:552-629 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m9s] [1m9s_A]
  • SWISS-PROT database: [P25147]
  • Domain organization of [INLB_LISMO] by SWISSPFAM
  • Domain found in 1M9S: [LRR ] by SMART
    • Other resources with information on 1M9S
  • Community annotation for 1M9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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