1MLD Oxidoreductase(Nad(A)-Choh(D)) date Jan 24, 1994
title Refined Structure Of Mitochondrial Malate Dehydrogenase From Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases
authors W.B.Gleason, Z.Fu, J.J.Birktoft, L.J.Banaszak
compound source
Molecule: Malate Dehydrogenase
Chain: A, B, C, D
Ec: 1.1.1.37
Engineered: Yes
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.750 146.760 67.580 90.00 108.16 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand CIT enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
note 1MLD (Molecule of the Month:pdb154)
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceRefined crystal structure of mitochondrial malate dehydrogenase from porcine heart and the consensus structure for dicarboxylic acid oxidoreductases., Gleason WB, Fu Z, Birktoft J, Banaszak L, Biochemistry 1994 Mar 1;33(8):2078-88. PMID:8117664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (1mld.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (1mld.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (1mld.pdb3.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 1MLD
  • CSU: Contacts of Structural Units for 1MLD
  • Likely Quarternary Molecular Structure file(s) for 1MLD
  • Retrieve 1MLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MLD from S2C, [Save to disk]
    • View 1MLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MLD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MLD, from MSDmotif at EBI
  • Genome occurence of 1MLD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mlda1, region A:1-144 [Jmol] [rasmolscript] [script source]
        - Domain d1mlda2, region A:145-313 [Jmol] [rasmolscript] [script source]
        - Domain d1mldb1, region B:1-144 [Jmol] [rasmolscript] [script source]
        - Domain d1mldb2, region B:145-313 [Jmol] [rasmolscript] [script source]
        - Domain d1mldc1, region C:1-144 [Jmol] [rasmolscript] [script source]
        - Domain d1mldc2, region C:145-313 [Jmol] [rasmolscript] [script source]
        - Domain d1mldd1, region D:1-144 [Jmol] [rasmolscript] [script source]
        - Domain d1mldd2, region D:145-313 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mld_D] [1mld_C] [1mld_B] [1mld_A] [1mld]
  • SWISS-PROT database: [P00346]
  • Domain organization of [MDHM_PIG] by SWISSPFAM
    • Other resources with information on 1MLD
  • Community annotation for 1MLD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1MLD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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