1NAM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG enzyme
related structures by homologous chain: 1FFN, 1FO0, 1KB5, 1KJ2, 1ZHB
Gene
Ontology
ChainFunctionProcessComponent
B


L


Primary referenceCDR3 loop flexibility contributes to the degeneracy of TCR recognition., Reiser JB, Darnault C, Gregoire C, Mosser T, Mazza G, Kearney A, van der Merwe PA, Fontecilla-Camps JC, Housset D, Malissen B, Nat Immunol 2003 Mar;4(3):241-7. PMID:12563259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1nam.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1NAM
  • CSU: Contacts of Structural Units for 1NAM
  • Likely Quarternary Molecular Structure file(s) for 1NAM
  • Structure Factors (307 Kb)
  • Retrieve 1NAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NAM from S2C, [Save to disk]
  • Re-refined 1nam structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NAM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NAM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nama_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1namb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1namh2, region H:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1namh1, region H:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1naml_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1nam from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nam] [1nam_A] [1nam_B] [1nam_H] [1nam_L] [1nam_P]
  • SWISS-PROT database: [P01887] [P01901] [P11212] [P04214]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [NCAP_VSIVG] [TVB6_MOUSE] by SWISSPFAM
  • Domains found in 1NAM: [IG] [IGc1 ] by SMART
    • Other resources with information on 1NAM
  • Community annotation for 1NAM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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