1OVM	Lyase	date	Mar 27, 2003
title	Crystal Structure Of Indolepyruvate Decarboxylase From Enter Cloacae
authors	A.Schutz, T.Sandalova, S.Ricagno, G.Hubner, S.Konig, G.Schneider
compound		source
Molecule: Indole-3-Pyruvate Decarboxylase Chain: A, B, C, D Synonym: Indolepyruvate Decarboxylase Ec: 4.1.1.74 Engineered: Yes		Organism_scientific: Enterobacter Cloacae Organism_taxid: 550 Gene: Ipdc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Puc19 Expression_system_plasmid: Pip362
symmetry	Space Group: P 21 21 2	R_factor 0.205 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.200 151.620 107.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	MG, TPP	enzyme	Lyase E.C.4.1.1.74 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of thiamindiphosphate-dependent indolepyruvate decarboxylase from Enterobacter cloacae, an enzyme involved in the biosynthesis of the plant hormone indole-3-acetic acid., Schutz A, Sandalova T, Ricagno S, Hubner G, Konig S, Schneider G, Eur J Biochem 2003 May;270(10):2312-2321. PMID:12752451

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk] Biological Unit Coordinates (1ovm.pdb1.gz) 331 Kb LPC: Ligand-Protein Contacts for 1OVM CSU: Contacts of Structural Units for 1OVM Likely Quarternary Molecular Structure file(s) for 1OVM Structure Factors (549 Kb) Retrieve 1OVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OVM from S2C, [Save to disk] Re-refined 1ovm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OVM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OVM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OVM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ovma1, region A:181-341 [Jmol] [rasmolscript] [script source]     - Domain d1ovma2, region A:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1ovma3, region A:356-551 [Jmol] [rasmolscript] [script source]     - Domain d1ovmb1, region B:181-341 [Jmol] [rasmolscript] [script source]     - Domain d1ovmb2, region B:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1ovmb3, region B:356-551 [Jmol] [rasmolscript] [script source]     - Domain d1ovmc1, region C:181-341 [Jmol] [rasmolscript] [script source]     - Domain d1ovmc2, region C:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1ovmc3, region C:356-551 [Jmol] [rasmolscript] [script source]     - Domain d1ovmd1, region D:181-341 [Jmol] [rasmolscript] [script source]     - Domain d1ovmd2, region D:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1ovmd3, region D:356-551 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ovm_B] [1ovm_A] [1ovm] [1ovm_C] [1ovm_D] SWISS-PROT database: [P23234] Domain organization of [DCIP_ENTCL] by SWISSPFAM

Other resources with information on 1OVM

Community annotation for 1OVM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---