1PVL Leucotoxin date Jan 12, 1999
title Structure Of The Panton-Valentine Leucocidin F Component Fro Staphylococcus Aureus
authors J.D.Pedelacq, L.Mourey, L.Maveyraud, G.Prevost, J.P.Samama
compound source
Molecule: Leucocidin
Chain: A
Synonym: Lukf-Pv
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: V8
Atcc: Atcc 49775
Collection: Atcc 49775
Cellular_location: Chromosome
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.740 72.380 98.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MES enzyme
related structures by homologous chain: 2LKF, 3LKF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of a Staphylococcus aureus leucocidin component (LukF-PV) reveals the fold of the water-soluble species of a family of transmembrane pore-forming toxins., Pedelacq JD, Maveyraud L, Prevost G, Baba-Moussa L, Gonzalez A, Courcelle E, Shepard W, Monteil H, Samama JP, Mourey L, Structure Fold Des 1999 Mar 15;7(3):277-87. PMID:10368297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1pvl.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1PVL
  • CSU: Contacts of Structural Units for 1PVL
  • Likely Quarternary Molecular Structure file(s) for 1PVL
  • Structure Factors (159 Kb)
  • Retrieve 1PVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PVL from S2C, [Save to disk]
  • Re-refined 1pvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PVL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pvl__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pvl_A] [1pvl]
  • SWISS-PROT database: [O50604]
  • Domain organization of [O50604_STAAU] by SWISSPFAM
    • Other resources with information on 1PVL
  • Community annotation for 1PVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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