1QLI Metal Binding Protein date Feb 17, 1997
title Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized Aver Structure
authors R.Konrat, R.Weiskirchen, B.Krautler, K.Bister
compound source
Molecule: Cysteine And Glycine-Rich Protein
Chain: A
Fragment: C-Terminal Lim Domain Residues 82 - 194
Synonym: Qcrp2(Lim2), Zn(II)-Qcrp2(Lim2)
Engineered: Yes
 Organism_scientific: Coturnix Japonica
Organism_common: Japanese Quail
Organism_taxid: 93934
Cell_line: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet3d-Qcrp2(Lim2)
methodSolution NMR
ligand ZN enzyme
Primary referenceSolution structure of the carboxyl-terminal LIM domain from quail cysteine-rich protein CRP2., Konrat R, Weiskirchen R, Krautler B, Bister K, J Biol Chem 1997 May 2;272(18):12001-7. PMID:9115265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1qli.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1QLI
  • CSU: Contacts of Structural Units for 1QLI
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1QLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QLI from S2C, [Save to disk]
    • View 1QLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QLI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QLI, from MSDmotif at EBI
  • Genome occurence of 1QLI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qli_1, region 117-144 [Jmol] [rasmolscript] [script source]
        - Domain d1qli_2, region 145-175 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qli_A] [1qli]
  • SWISS-PROT database: [Q05158]
  • Domain organization of [CSRP2_COTJA] by SWISSPFAM
  • Domain found in 1QLI: [LIM ] by SMART
    • Other resources with information on 1QLI
  • Community annotation for 1QLI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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