1TZ8 Transport Protein date Jul 09, 2004
title The Monoclinic Crystal Structure Of Transthyretin In Complex Diethylstilbestrol
authors E.M.Morais-De-Sa, P.J.B.Pereira, M.J.Saraiva, A.M.Damas
compound source
Molecule: Transthyretin
Chain: A, B, C, D
Synonym: Prealbumin, Tbpa, Ttr, Attr
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.271 96.961 81.717 90.00 107.94 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ACT, CO3, DES, DMS, GOL enzyme
related structures by homologous chain: 1TTR, 2PAB
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • hormone activity


    • Primary referenceThe crystal structure of transthyretin in complex with diethylstilbestrol: a promising template for the design of amyloid inhibitors., Morais-de-Sa E, Pereira PJ, Saraiva MJ, Damas AM, J Biol Chem 2004 Dec 17;279(51):53483-90. Epub 2004 Oct 06. PMID:15469931
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1tz8.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (1tz8.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (1tz8.pdb3.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1TZ8
  • CSU: Contacts of Structural Units for 1TZ8
  • Likely Quarternary Molecular Structure file(s) for 1TZ8
  • Structure Factors (661 Kb)
  • Retrieve 1TZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TZ8 from S2C, [Save to disk]
  • Re-refined 1tz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TZ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TZ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tz8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tz8b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1tz8c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1tz8d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tz8] [1tz8_D] [1tz8_A] [1tz8_C] [1tz8_B]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 1TZ8: [TR_THY ] by SMART
    • Other resources with information on 1TZ8
  • Community annotation for 1TZ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science