1UH0 Sugar Binding Protein date Jun 23, 2003
title Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
authors A.A.Jeyaprakash, S.Katiyar, C.P.Swaminathan, K.Sekar, A.Surolia,
compound source
Molecule: Agglutinin Alpha Chain
Chain: A, C, E, G
Synonym: Jacalin Alpha Chain
 Organism_scientific: Artocarpus Integer
Organism_taxid: 3490
Organ: Seeds

Molecule: Agglutinin Beta-3 Chain
Chain: B, D, F, H
Synonym: Jacalin Beta-3 Chain
Organism_scientific: Artocarpus Integer
Organism_taxid: 3490
Organ: Seeds
symmetry Space Group: P 65 2 2
R_factor 0.194 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.811 129.811 158.527 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand MGC enzyme
related structures by homologous chain: 1TP8, 1UH1
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceStructural basis of the carbohydrate specificities of jacalin: an X-ray and modeling study., Jeyaprakash AA, Katiyar S, Swaminathan CP, Sekar K, Surolia A, Vijayan M, J Mol Biol 2003 Sep 5;332(1):217-28. PMID:12946359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1uh0.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (1uh0.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (1uh0.pdb3.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 1UH0
  • CSU: Contacts of Structural Units for 1UH0
  • Likely Quarternary Molecular Structure file(s) for 1UH0
  • Structure Factors (150 Kb)
  • Retrieve 1UH0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UH0 from S2C, [Save to disk]
  • Re-refined 1uh0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UH0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UH0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UH0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uh0.1, region B:,A [Jmol] [rasmolscript] [script source]
        - Domain d1uh0.2, region D:,C [Jmol] [rasmolscript] [script source]
        - Domain d1uh0.3, region F:,E [Jmol] [rasmolscript] [script source]
        - Domain d1uh0.4, region H:,G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uh0_F] [1uh0_H] [1uh0_A] [1uh0_D] [1uh0_B] [1uh0_C] [1uh0] [1uh0_E] [1uh0_G]
  • SWISS-PROT database: [P18670] [P18673]
  • Domain organization of [LECA_ARTIN] [LECB3_ARTIN] by SWISSPFAM
  • Domain found in 1UH0: [Jacalin ] by SMART
    • Other resources with information on 1UH0
  • Community annotation for 1UH0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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