1V5E Oxidoreductase date Nov 22, 2003
title Crystal Structure Of Pyruvate Oxidase Containing Fad, From A Viridans
authors M.T.Hossain, K.Suzuki, T.Yamamoto, S.Imamura, T.Sekiguchi, A.Take
compound source
Molecule: Pyruvate Oxidase
Chain: A
Ec: 1.2.3.3
 Organism_scientific: Aerococcus Viridans
Organism_taxid: 1377
symmetry Space Group: I 2 2 2
R_factor 0.231 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.660 106.120 155.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand FAD, SO4 enzyme Oxidoreductase E.C.1.2.3.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1v5e.pdb1.gz) 415 Kb
  • LPC: Ligand-Protein Contacts for 1V5E
  • CSU: Contacts of Structural Units for 1V5E
  • Likely Quarternary Molecular Structure file(s) for 1V5E
  • Structure Factors (924 Kb)
  • Retrieve 1V5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V5E from S2C, [Save to disk]
  • Re-refined 1v5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1V5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V5E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v5e_A] [1v5e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1V5E
  • Community annotation for 1V5E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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