1WUF Structural Genomics, Unknown Function date Dec 07, 2004
title Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262
authors A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burle York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Hypothetical Protein Lin2664
Chain: A, B
Engineered: Yes
 Organism_scientific: Listeria Innocua
Organism_taxid: 272626
Strain: Clip11262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.721 87.346 161.489 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLoss of quaternary structure is associated with rapid sequence divergence in the OSBS family., Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME, Proc Natl Acad Sci U S A. 2014 May 28. pii: 201318703. PMID:24872444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1wuf.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 1WUF
  • CSU: Contacts of Structural Units for 1WUF
  • Likely Quarternary Molecular Structure file(s) for 1WUF
  • Structure Factors (243 Kb)
  • Retrieve 1WUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WUF from S2C, [Save to disk]
  • Re-refined 1wuf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WUF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WUF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wufa2, region A:1001-1126 [Jmol] [rasmolscript] [script source]
        - Domain d1wufa1, region A:1127-1370 [Jmol] [rasmolscript] [script source]
        - Domain d1wufb2, region B:2001-2126 [Jmol] [rasmolscript] [script source]
        - Domain d1wufb1, region B:2127-2370 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wuf_B] [1wuf] [1wuf_A]
  • SWISS-PROT database: [Q927X3]
  • Domain organization of [Q927X3_LISIN] by SWISSPFAM
  • Domain found in 1WUF: [MR_MLE ] by SMART
    • Other resources with information on 1WUF
  • Community annotation for 1WUF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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