OCA Atlas for 1XO8

1XO8

Structural Genomics, Unknown Function

date

Oct 06, 2004

title

Solution Structure Of At1g01470 From Arabidopsis Thaliana

authors

S.Singh, C.C.Cornilescu, R.C.Tyler, G.Cornilescu, M.Tonelli, M.S. J.L.Markley, Center For Eukaryotic Structural Genomics (Cesg

compound

source

Molecule: At1g01470
Chain: A
Engineered: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562

method

Solution NMR

related structures

by homologous chain: 1YYC

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein., Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL, Protein Sci. 2005 Oct;14(10):2601-9. Epub 2005 Sep 9. PMID:16155204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (880 Kb) [Save to disk]

Biological Unit Coordinates (1xo8.pdb1.gz) 43 Kb

CSU: Contacts of Structural Units for 1XO8

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1XO8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1XO8 from S2C, [Save to disk]

View 1XO8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XO8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1XO8, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1xo8a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xo8_A] [1xo8]

SWISS-PROT database: [O03983]

Domain organization of [LEA14_ARATH] by SWISSPFAM

Domain found in 1XO8: [WHy ] by SMART

Other resources with information on 1XO8

Community annotation for 1XO8 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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