238D Dna date Nov 02, 1995
title Crystal Structure Of The Dna Decamer D(Agg(Br)Catgcct): Comp With D(Aggcatgcct) And Implications For Cobalt Hexammine Bi Dna
authors C.M.Nunn
compound source
Molecule: Dna (5'-D(Apgpgp(Cbr)Paptpgpcpcpt)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 61 2 2
R_factor 0.196 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.200 33.200 77.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CBR enzyme
Primary referenceCrystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA., Nunn CM, J Biomol Struct Dyn 1996 Aug;14(1):49-55. PMID:8877561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (238d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 238D
  • CSU: Contacts of Structural Units for 238D
  • Likely Quarternary Molecular Structure file(s) for 238D
  • Retrieve 238D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 238D from S2C, [Save to disk]
    • View 238D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 238D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 238D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [238d_A] [238d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 238D
  • Community annotation for 238D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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