2AJV Immune System date Aug 02, 2005
title Crystal Structure Of Cocaine Catalytic Antibody 7a1 Fab' In With Cocaine
authors X.Zhu, I.A.Wilson
compound source
Molecule: Antibody 7a1 Fab'
Chain: L
Fragment: Immunoglobulin Igg1 Kappa Light Chain
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Mouse

Molecule: Antibody 7a1 Fab'
Chain: H
Fragment: Immunoglobulin Igg1 Heavy Chain
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Mouse
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.254 117.320 85.217 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand COC enzyme
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceComplete reaction cycle of a cocaine catalytic antibody at atomic resolution., Zhu X, Dickerson TJ, Rogers CJ, Kaufmann GF, Mee JM, McKenzie KM, Janda KD, Wilson IA, Structure. 2006 Feb;14(2):205-16. PMID:16472740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (2ajv.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 2AJV
  • CSU: Contacts of Structural Units for 2AJV
  • Likely Quarternary Molecular Structure file(s) for 2AJV
  • Structure Factors (472 Kb)
  • Retrieve 2AJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AJV from S2C, [Save to disk]
  • Re-refined 2ajv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AJV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AJV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ajv_H] [2ajv] [2ajv_L]
  • SWISS-PROT database: [P01869] [P01626]
  • Domain organization of [IGH1M_MOUSE] [KV2A1_MOUSE] by SWISSPFAM
  • Domains found in 2AJV: [IG_like] [IGv ] by SMART
    • Other resources with information on 2AJV
  • Community annotation for 2AJV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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