2B82 Hydrolase date Oct 06, 2005
title Crystal Structure Of Apha Class B Acid Phosphatasephosphotr Ternary Complex With Adenosine And Phosphate Bound To The C Metal At 1.2 A Resolution
authors V.Calderone, C.Forleo, M.Benvenuti, M.C.Thaller, G.M.Rossolini, S
compound source
Molecule: Class B Acid Phosphatase
Chain: A, B
Synonym: Apha
Ec: 3.1.3.2
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Apha, Napa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.971 66.868 86.120 90.00 116.96 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand ADN, MG, PO4 enzyme Hydrolase E.C.3.1.3.2 BRENDA
note 2B82 is a representative structure and supersedes 1RMW
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • acid phosphatase activity


  • Primary referenceA structure-based proposal for the catalytic mechanism of the bacterial acid phosphatase AphA belonging to the DDDD superfamily of phosphohydrolases., Calderone V, Forleo C, Benvenuti M, Thaller MC, Rossolini GM, Mangani S, J Mol Biol. 2006 Jan 27;355(4):708-21. Epub 2005 Nov 10. PMID:16330049
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (2b82.pdb1.gz) 315 Kb
  • LPC: Ligand-Protein Contacts for 2B82
  • CSU: Contacts of Structural Units for 2B82
  • Likely Quarternary Molecular Structure file(s) for 2B82
  • Structure Factors (1537 Kb)
  • Retrieve 2B82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B82 from S2C, [Save to disk]
  • Re-refined 2b82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B82
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B82, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b82_B] [2b82] [2b82_A]
  • SWISS-PROT database: [P0AE22]
  • Domain organization of [APHA_ECOLI] by SWISSPFAM
  • Other resources with information on 2B82
  • Community annotation for 2B82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science