2BJM	Immune System	date	Feb 04, 2005
title	Spe7:Anthrone Complex
authors	L.C.James, D.S.Tawfik
compound		source
Molecule: Ige Spe7 Light Chain Chain: L Fragment: Light Chain, Residues 1-110 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ige Spe7 Heavy Chain Chain: H Fragment: Heavy Chain, Residues 1-120 Engineered: Yes Other_details: Anthrone Attached		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 4	R_factor 0.268 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.672 79.672 67.958 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	ANF	enzyme
Gene Ontology	Chain Function Process Component L
Primary reference	Structure and kinetics of a transient antibody binding intermediate reveal a kinetic discrimination mechanism in antigen recognition., James LC, Tawfik DS, Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12730-5. Epub 2005 Aug 29. PMID:16129832

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (2bjm.pdb1.gz) 143 Kb LPC: Ligand-Protein Contacts for 2BJM CSU: Contacts of Structural Units for 2BJM Likely Quarternary Molecular Structure file(s) for 2BJM Structure Factors (47 Kb) Retrieve 2BJM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BJM from S2C, [Save to disk] Re-refined 2bjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BJM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BJM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BJM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bjm_H] [2bjm] [2bjm_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2BJM: [IGv ] by SMART

Other resources with information on 2BJM

Community annotation for 2BJM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---