2D3E Contractile Protein date Sep 27, 2005
title Crystal Structure Of The C-Terminal Fragment Of Rabbit Skele Tropomyosin
authors Y.Nitanai, K.Maeda, N.Oda, S.Minakata, Y.Maeda
compound source
Molecule: General Control Protein Gcn4 And Tropomyosin 1 Al
Chain: A, B, C, D
Fragment: Residues 151-175, Residues 176-284
Synonym: Alpha-Tropomyosin
Engineered: Yes
Other_details: N-Terminal Methionine Followed By Sequence D Residues 254-278 Of Gcn4 Leucine Zipper And Then C-Terminal Database Residues 176-284 Of Rabbit Skeletal Muscle Alpha-T
 Organism_scientific: Saccharomyces Cerevisiae, Oryctolagus Cuniculus;
Organism_common: Baker'S Yeast, Rabbit
Organism_taxid: 4932, 9986
Strain: ,
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d
symmetry Space Group: P 1
R_factor 0.249 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.080 46.860 95.260 101.49 101.66 90.13
method X-Ray Diffractionresolution 2.60 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2d3e.pdb1.gz) 87 Kb
  • CSU: Contacts of Structural Units for 2D3E
  • Likely Quarternary Molecular Structure file(s) for 2D3E
  • Structure Factors (123 Kb)
  • Retrieve 2D3E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D3E from S2C, [Save to disk]
  • Re-refined 2d3e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D3E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D3E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D3E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d3e_A] [2d3e] [2d3e_D] [2d3e_B] [2d3e_C]
  • SWISS-PROT database: [P03069] [P58772]
  • Domain organization of [GCN4_YEAST] [TPM1_RABIT] by SWISSPFAM
    • Other resources with information on 2D3E
  • Community annotation for 2D3E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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