2DCJ	Hydrolase	date	Jan 07, 2006
title	A Two-Domain Structure Of Alkaliphilic Xynj From Bacillus Sp
authors	Ihsanawati, N.Tanaka, S.Nakamura, T.Kumasaka
compound		source
Molecule: Xylanase J Chain: A, B Ec: 3.2.1.8 Engineered: Yes		Organism_scientific: Bacillus Sp. Organism_taxid: 98930 Strain: 41m-1 Gene: Xynj Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc119
symmetry	Space Group: P 61 2 2	R_factor 0.159 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.927 122.927 331.943 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	CA, GOL, MPD	enzyme	Hydrolase E.C.3.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (2dcj.pdb1.gz) 121 Kb LPC: Ligand-Protein Contacts for 2DCJ CSU: Contacts of Structural Units for 2DCJ Likely Quarternary Molecular Structure file(s) for 2DCJ Structure Factors (994 Kb) Retrieve 2DCJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DCJ from S2C, [Save to disk] Re-refined 2dcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DCJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DCJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DCJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dcj_B] [2dcj] [2dcj_A] SWISS-PROT database: [Q9RC94] Domain organization of [Q9RC94_9BACI] by SWISSPFAM

Other resources with information on 2DCJ

Community annotation for 2DCJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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