2E3U	Rna Binding Protein	date	Nov 29, 2006
title	Crystal Structure Analysis Of Dim2p From Pyrococcus Horikosh
authors	M.Tanokura, M.Z.Jia
compound		source
Molecule: Hypothetical Protein Ph1566 Chain: A Synonym: Ph-Dim2p Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Ot3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 21	R_factor 0.228 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.949 47.450 95.722 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A., Jia MZ, Ohtsuka J, Lee WC, Nagata K, Tanokura M, Proteins. 2007 Nov 1;69(2):428-32. PMID:17654551

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (2e3u.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 2E3U Likely Quarternary Molecular Structure file(s) for 2E3U Structure Factors (260 Kb) Retrieve 2E3U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2E3U from S2C, [Save to disk] Re-refined 2e3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2E3U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2E3U

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2E3U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2e3u] [2e3u_A] SWISS-PROT database: [O59282] Domain organization of [O59282_PYRHO] by SWISSPFAM Domain found in 2E3U: [KH ] by SMART

Other resources with information on 2E3U

Community annotation for 2E3U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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