2GMI	Ligase, Human Protein	date	Apr 06, 2006
title	Mms2ubc13~Ubiquitin
authors	C.Wolberger, M.J.Eddins, C.M.Carlile, K.G.Gomez, C.M.Pickart
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 13 Chain: A Synonym: Ubiquitin-Protein Ligase 13, Ubiquitin Carrier Pro Ec: 6.3.2.19 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ubc13 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin-Conjugating Enzyme Variant Mms2 Chain: B Synonym: Uev Mms2 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Mms2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin Chain: C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.237 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.230 86.410 86.620 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation., Eddins MJ, Carlile CM, Gomez KM, Pickart CM, Wolberger C, Nat Struct Mol Biol. 2006 Oct;13(10):915-20. Epub 2006 Sep 17. PMID:16980971

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2gmi.pdb1.gz) 59 Kb CSU: Contacts of Structural Units for 2GMI Likely Quarternary Molecular Structure file(s) for 2GMI Structure Factors (98 Kb) Retrieve 2GMI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GMI from S2C, [Save to disk] Re-refined 2gmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GMI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GMI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GMI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gmi_C] [2gmi_B] [2gmi_A] [2gmi] SWISS-PROT database: [P53152] [P52490] [Q867C3] Domain organization of [MMS2_YEAST] [UBC13_YEAST] [UBIQ_PANTR] by SWISSPFAM Domains found in 2GMI: [UBCc] [UBQ ] by SMART

Other resources with information on 2GMI

Community annotation for 2GMI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---