2GVG	Transferase	date	May 02, 2006
title	Crystal Structure Of Human Nmprtase And Its Complex With Nmn
authors	J.A.Khan, X.Tao, L.Tong
compound		source
Molecule: Nicotinamide Phosphoribosyltransferase Chain: A, B, C, D, E, F Ec: 2.4.2.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nampt Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.197 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 253.070 101.367 148.200 90.00 125.48 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	NMN, PO4	enzyme	Transferase E.C.2.4.2.12 BRENDA
note	2GVG is a representative structure
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Molecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents., Khan JA, Tao X, Tong L, Nat Struct Mol Biol. 2006 Jul;13(7):582-8. Epub 2006 Jun 18. PMID:16783377

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (475 Kb) [Save to disk] Biological Unit Coordinates (2gvg.pdb1.gz) 157 Kb Biological Unit Coordinates (2gvg.pdb2.gz) 158 Kb Biological Unit Coordinates (2gvg.pdb3.gz) 162 Kb Biological Unit Coordinates (2gvg.pdb4.gz) 166 Kb LPC: Ligand-Protein Contacts for 2GVG CSU: Contacts of Structural Units for 2GVG Likely Quarternary Molecular Structure file(s) for 2GVG Structure Factors (2154 Kb) Retrieve 2GVG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GVG from S2C, [Save to disk] Re-refined 2gvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GVG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GVG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GVG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gvg_F] [2gvg_B] [2gvg_A] [2gvg_D] [2gvg_E] [2gvg_C] [2gvg] SWISS-PROT database: [P43490] Domain organization of [NAMPT_HUMAN] by SWISSPFAM

Other resources with information on 2GVG

Community annotation for 2GVG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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