2H7V	Signaling Protein	date	Jun 04, 2006
title	Co-Crystal Structure Of Ypka-Rac1
authors	G.Prehna, M.Ivanov, J.B.Bliska, C.E.Stebbins
compound		source
Molecule: Migration-Inducing Protein 5 Chain: A, B Synonym: Ras-Related C3 Botulinum Toxin Substrate 1, Isofor Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mig5, Rac1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t3
Molecule: Protein Kinase Ypka Chain: C, D Synonym: Protein Kinase A, Targeted Effector Protein Kinase Engineered: Yes		Organism_scientific: Yersinia Pseudotuberculosis Organism_taxid: 633 Gene: Ypka Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t3
symmetry	Space Group: P 1	R_factor 0.222 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.398 75.519 99.772 92.08 103.38 115.79
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GDP, MG	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Yersinia virulence depends on mimicry of host rho-family nucleotide dissociation inhibitors., Prehna G, Ivanov MI, Bliska JB, Stebbins CE, Cell. 2006 Sep 8;126(5):869-80. PMID:16959567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk] Biological Unit Coordinates (2h7v.pdb1.gz) 73 Kb Biological Unit Coordinates (2h7v.pdb2.gz) 71 Kb LPC: Ligand-Protein Contacts for 2H7V CSU: Contacts of Structural Units for 2H7V Likely Quarternary Molecular Structure file(s) for 2H7V Structure Factors (521 Kb) Retrieve 2H7V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H7V from S2C, [Save to disk] Re-refined 2h7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H7V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2H7V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2H7V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h7v_B] [2h7v_D] [2h7v_C] [2h7v] [2h7v_A] SWISS-PROT database: [P63000] [Q05608] Domain organization of [RAC1_HUMAN] [YPKA_YERPS] by SWISSPFAM Domain found in 2H7V: [RHO ] by SMART

Other resources with information on 2H7V

Community annotation for 2H7V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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