2IE8 Transferase date Sep 18, 2006
title Crystal Structure Of Thermus Caldophilus Phosphoglycerate Ki The Open Conformation
authors J.H.Lee, Y.J.Im, S.H.Eom
compound source
Molecule: Phosphoglycerate Kinase
Chain: A
Ec: 2.7.2.3
Engineered: Yes
Organism_scientific: Thermus Caldophilus
Organism_taxid: 272
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.100 71.300 80.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Thermus caldophilus phosphoglycerate kinase in the open conformation., Lee JH, Im YJ, Bae J, Kim D, Kim MK, Kang GB, Lee DS, Eom SH, Biochem Biophys Res Commun. 2006 Dec 1;350(4):1044-9. Epub 2006 Oct 6. PMID:17045964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2ie8.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 2IE8
  • Likely Quarternary Molecular Structure file(s) for 2IE8
  • Structure Factors (396 Kb)
  • Retrieve 2IE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IE8 from S2C, [Save to disk]
  • Re-refined 2ie8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IE8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IE8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ie8] [2ie8_A]
  • SWISS-PROT database: [Q08GC7]
  • Domain organization of [Q08GC7_THECA] by SWISSPFAM
  • Other resources with information on 2IE8
  • Community annotation for 2IE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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