2O5P Transport Protein date Dec 06, 2006
title Crystal Structure Of The Full Length Ferric Pyoverdine Outer Receptor Fpva Of Pseudomonas Aeruginosa In Its Apo Form
authors D.Cobessi
compound source
Molecule: Ferripyoverdine Receptor
Chain: A, B
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Fpva
Expression_system: Pseudomonas Aeruginosa
Expression_system_taxid: 287
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppvr2
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.880 128.780 139.150 90.00 130.55 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand N8E, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • siderophore uptake transmemb...


    • Primary referenceA beta strand lock exchange for signal transduction in TonB-dependent transducers on the basis of a common structural motif., Brillet K, Journet L, Celia H, Paulus L, Stahl A, Pattus F, Cobessi D, Structure. 2007 Nov;15(11):1383-91. PMID:17997964
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (2o5p.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (2o5p.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 2O5P
  • CSU: Contacts of Structural Units for 2O5P
  • Likely Quarternary Molecular Structure file(s) for 2O5P
  • Structure Factors (786 Kb)
  • Retrieve 2O5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O5P from S2C, [Save to disk]
  • Re-refined 2o5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O5P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o5p_B] [2o5p_A] [2o5p]
  • SWISS-PROT database: [P48632]
  • Belongs to the outer membrane receptor (omr) family according to TCDB.
  • Domain organization of [FPVA_PSEAE] by SWISSPFAM
  • Domain found in 2O5P: [STN ] by SMART
    • Other resources with information on 2O5P
  • Community annotation for 2O5P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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