2PGE	Lyase	date	Apr 09, 2007
title	Crystal Structure Of Menc From Desulfotalea Psychrophila Lsv
authors	R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound		source
Molecule: Menc Chain: A Synonym: O-Succinylbenzoate Synthase, Osbs, Related To N-Ac Acid Racemase; Ec: 4.2.1.- Engineered: Yes		Organism_scientific: Desulfotalea Psychrophila Lsv54 Organism_taxid: 177439 Strain: Lsv54, Dsm 12343 Gene: Menc, Dp0251 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Psgx3(Bc)
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.130 82.784 89.578 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand		enzyme	Lyase E.C.4.2.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family., Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME, Proc Natl Acad Sci U S A. 2014 May 28. pii: 201318703. PMID:24872444

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (2pge.pdb1.gz) 60 Kb CSU: Contacts of Structural Units for 2PGE Likely Quarternary Molecular Structure file(s) for 2PGE Structure Factors (400 Kb) Retrieve 2PGE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PGE from S2C, [Save to disk] Re-refined 2pge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PGE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PGE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PGE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pge] [2pge_A] SWISS-PROT database: [Q6ARP5] Domain organization of [Q6ARP5_DESPS] by SWISSPFAM Domain found in 2PGE: [MR_MLE ] by SMART

Other resources with information on 2PGE

Community annotation for 2PGE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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