2WOQ	Lyase Antibiotic	date	Jul 27, 2009
title	Porphobilinogen Synthase (Hemb) In Complex With 5-Acetamido- Oxohexanoic Acid (Alaremycin 2)
authors	I.U.Heinemann, C.Schulz, W.D.Schubert, D.W.Heinz, Y.G.Wang, Y.K Y.Awa, M.Wachi, D.Jahn, M.Jahn
compound		source
Molecule: Delta-Aminolevulinic Acid Dehydratase Chain: A Synonym: Porphobilinogen Synthase, Aladh, Alad Ec: 4.2.1.24 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Plus
symmetry	Space Group: I 4 2 2	R_factor 0.146 R_Free 0.180
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.444 84.444 158.528 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	AYC, EPE, MG, PE5	enzyme	Lyase E.C.4.2.1.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the heme biosynthetic Pseudomonas aeruginosa Porphobilinogen Synthase in Complex with the Antibiotic Alaremycin., Heinemann IU, Schulz C, Schubert WD, Heinz DW, Wang YG, Kobayashi Y, Awa Y, Wachi M, Jahn D, Jahn M, Antimicrob Agents Chemother. 2009 Oct 12. PMID:19822707

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (2woq.pdb1.gz) 458 Kb LPC: Ligand-Protein Contacts for 2WOQ CSU: Contacts of Structural Units for 2WOQ Structure Factors (406 Kb) Retrieve 2WOQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WOQ from S2C, [Save to disk] Re-refined 2woq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WOQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WOQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WOQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2woq] [2woq_A] SWISS-PROT database: [Q59643] Domain organization of [HEM2_PSEAE] by SWISSPFAM Domain found in 2WOQ: [ALAD ] by SMART

Other resources with information on 2WOQ

Community annotation for 2WOQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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