2Y1N	Ligase Transferase	date	Dec 08, 2010
title	Structure Of C-Cbl-Zap-70 Peptide Complex
authors	H.Dou, G.J.Sibbet, D.T.Huang
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Chain: A, C Fragment: Residues 47-435 Synonym: Cbl C-Cbl, Casitas B-Lineage Lymphoma Proto-Oncoge Oncogene C-Cbl, Ring Finger Protein 55, Signal Transduction Cbl; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pgex4t1
Molecule: Tyrosine-Protein Kinase Zap-70 Zap-70,70 Kda Zeta Associated Protein, Syk-Related Tyrosine Kinase; Chain: B, D Fragment: Peptide, Residues 286-297 Ec: 2.7.10.2 Engineered: Yes Other_details: Zap-70 Peptide (Tlnsdg(P)Ytpepa) With Phosph At Position 7		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 65	R_factor 0.158 R_Free 0.180
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.570 93.570 189.599 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CA, PTR, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural basis for autoinhibition and phosphorylation-dependent activation of c-Cbl., Dou H, Buetow L, Hock A, Sibbet GJ, Vousden KH, Huang DT, Nat Struct Mol Biol. 2012 Jan 22;19(2):184-92. doi: 10.1038/nsmb.2231. PMID:22266821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (2y1n.pdb1.gz) 67 Kb Biological Unit Coordinates (2y1n.pdb2.gz) 67 Kb LPC: Ligand-Protein Contacts for 2Y1N CSU: Contacts of Structural Units for 2Y1N Structure Factors (470 Kb) Retrieve 2Y1N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y1N from S2C, [Save to disk] Re-refined 2y1n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y1N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Y1N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y1N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y1n_C] [2y1n_D] [2y1n_B] [2y1n_A] [2y1n] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2Y1N: [RING ] by SMART

Other resources with information on 2Y1N

Community annotation for 2Y1N at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---