2YW6	Oxidoreductase	date	Apr 19, 2007
title	Structural Studies Of N Terminal Deletion Mutant Of Dps From Mycobacterium Smegmatis
authors	S.Roy, R.Saraswathi, S.Gupta, K.Sekar, D.Chatterji, M.Vijayan
compound		source
Molecule: Dna Protection During Starvation Protein Chain: A, B, C Synonym: Dna Binding Protein From Stationary Phase Cells Ec: 1.16.-.- Engineered: Yes		Organism_scientific: Mycobacterium Smegmatis Organism_taxid: 1772 Gene: Dps Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Msdpsdelta9
symmetry	Space Group: P 62 2 2	R_factor 0.229 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.443 87.443 212.537 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.53 Å
ligand		enzyme	Oxidoreductase E.C.1.16 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Role of N and C-terminal Tails in DNA Binding and Assembly in Dps: Structural Studies of Mycobacterium smegmatis Dps Deletion Mutants., Roy S, Saraswathi R, Gupta S, Sekar K, Chatterji D, Vijayan M, J Mol Biol. 2007 Jul 20;370(4):752-67. Epub 2007 May 10. PMID:17543333

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (2yw6.pdb1.gz) 292 Kb CSU: Contacts of Structural Units for 2YW6 Likely Quarternary Molecular Structure file(s) for 2YW6 Structure Factors (133 Kb) Retrieve 2YW6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YW6 from S2C, [Save to disk] Re-refined 2yw6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YW6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YW6

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YW6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yw6_C] [2yw6] [2yw6_B] [2yw6_A] SWISS-PROT database: [P0C558] Domain organization of [DPS_MYCSM] by SWISSPFAM

Other resources with information on 2YW6

Community annotation for 2YW6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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