2Z4I Signaling Protein Activator date Jun 18, 2007
title Crystal Structure Of The Cpx Pathway Activator Nlpe From Esc Coli
authors Y.Hirano, M.M.Hossain, K.Takeda, H.Tokuda, K.Miki
compound source
Molecule: Copper Homeostasis Protein Cutf
Chain: A, B
Synonym: Lipoprotein Nlpe
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Nlpe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkt-Mnlpe
symmetry Space Group: P 43 21 2
R_factor 0.224 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.422 121.422 84.456 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE, P6G, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli., Hirano Y, Hossain MM, Takeda K, Tokuda H, Miki K, Structure. 2007 Aug;15(8):963-76. PMID:17698001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2z4i.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2z4i.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2Z4I
  • CSU: Contacts of Structural Units for 2Z4I
  • Likely Quarternary Molecular Structure file(s) for 2Z4I
  • Structure Factors (285 Kb)
  • Retrieve 2Z4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z4I from S2C, [Save to disk]
  • Re-refined 2z4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z4I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z4I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z4i] [2z4i_B] [2z4i_A]
  • SWISS-PROT database: [P40710]
  • Domain organization of [NLPE_ECOLI] by SWISSPFAM
  • Other resources with information on 2Z4I
  • Community annotation for 2Z4I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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