3CAN Lyase Activator date Feb 20, 2008
title Crystal Structure Of A Domain Of Pyruvate-Formate Lyase-Acti Enzyme From Bacteroides Vulgatus Atcc 8482
authors B.Nocek, R.Hendricks, C.Hatzos, R.Jedrzejczak, A.Joachimiak, Midw Center For Structural Genomics (Mcsg)
compound source
Molecule: Pyruvate-Formate Lyase-Activating Enzyme
Chain: A
Fragment: Domain: Residues 124-302
Engineered: Yes
 Organism_scientific: Bacteroides Vulgatus Atcc 8482
Organism_taxid: 435590
Strain: Dsm 1447 Nctc 11154
Gene: Bvu_1420
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 43 21 2
R_factor 0.162 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.768 73.768 101.358 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE enzyme
Gene BVU
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3can.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3CAN
  • CSU: Contacts of Structural Units for 3CAN
  • Likely Quarternary Molecular Structure file(s) for 3CAN
  • Structure Factors (185 Kb)
  • Retrieve 3CAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CAN from S2C, [Save to disk]
  • Re-refined 3can structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CAN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CAN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3can] [3can_A]
  • SWISS-PROT database: [A6L094]
  • Domain organization of [A6L094_BACV8] by SWISSPFAM
    • Other resources with information on 3CAN
  • Community annotation for 3CAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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