3DPC	Hydrolase	date	Jul 07, 2008
title	Structure Of E.Coli Alkaline Phosphatase Mutant In Complex W Phosphorylated Peptide
authors	W.H.Wang, T.Jiang
compound		source
Molecule: Alkaline Phosphatase Chain: A, B Synonym: Apase Ec: 3.1.3.1 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K12 Gene: Phoa, B0383, Jw0374 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sm547 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pask75
Molecule: Phosphorylated Peptide Chain: C Engineered: Yes		Synthetic: Yes Other_details: This Sequence Is Chemically Synthesized
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.862 107.740 148.389 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	PO4, TPO, TRS	enzyme	Hydrolase E.C.3.1.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B oxidoreductase activity, act... hydrogenase (acceptor) activ...
Primary reference	Development of a universal phosphorylated peptide-binding protein for simultaneous assay of kinases., Li W, Bi L, Wang W, Li Y, Zhou Y, Wei H, Jiang T, Bai L, Chen Y, Zhang Z, Yuan X, Xiao J, Zhang XE, Biosens Bioelectron. 2009 May 15;24(9):2871-7. Epub 2009 Mar 3. PMID:19349157

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (3dpc.pdb1.gz) 136 Kb LPC: Ligand-Protein Contacts for 3DPC CSU: Contacts of Structural Units for 3DPC Likely Quarternary Molecular Structure file(s) for 3DPC Structure Factors (359 Kb) Retrieve 3DPC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DPC from S2C, [Save to disk] Re-refined 3dpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DPC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DPC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DPC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dpc] [3dpc_C] [3dpc_A] [3dpc_B] SWISS-PROT database: [P00634] Domain organization of [PPB_ECOLI] by SWISSPFAM Domain found in 3DPC: [alkPPc ] by SMART

Other resources with information on 3DPC

Community annotation for 3DPC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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