3F5X	Transferase Cell Cycle	date	Nov 04, 2008
title	Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Site
authors	J.R.Kiefer, J.E.Day, N.L.Caspers, K.J.Mathis, K.K.Kretzmer, R.A.W B.A.Reitz, R.A.Stegeman, J.I.Trujillo, W.Huang, A.Thorarensen, L A.Wrightstone, L.Christine, R.Compton, X.Li
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A, C Synonym: P33 Protein Kinase Ec: 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cyclin-A2 Chain: B, D Fragment: Unp Residues 177-432 Synonym: Cyclin-A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccna2, Ccn1, Ccna Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: P 62 2 2	R_factor 0.266 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 184.051 184.051 214.848 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	EZV, GOL, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: design and synthesis of a potent and isoform selective PKC-zeta inhibitor., Trujillo JI, Kiefer JR, Huang W, Thorarensen A, Xing L, Caspers NL, Day JE, Mathis KJ, Kretzmer KK, Reitz BA, Weinberg RA, Stegeman RA, Wrightstone A, Christine L, Compton R, Li X, Bioorg Med Chem Lett. 2009 Feb 1;19(3):908-11. Epub 2008 Dec 6. PMID:19097791

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (3f5x.pdb1.gz) 352 Kb Biological Unit Coordinates (3f5x.pdb2.gz) 178 Kb Biological Unit Coordinates (3f5x.pdb3.gz) 91 Kb Biological Unit Coordinates (3f5x.pdb4.gz) 90 Kb LPC: Ligand-Protein Contacts for 3F5X CSU: Contacts of Structural Units for 3F5X Likely Quarternary Molecular Structure file(s) for 3F5X Structure Factors (1960 Kb) Retrieve 3F5X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F5X from S2C, [Save to disk] Re-refined 3f5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F5X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F5X

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F5X, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f5x_B] [3f5x_A] [3f5x_D] [3f5x_C] [3f5x] SWISS-PROT database: [P20248] [P24941] Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM Domains found in 3F5X: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART

Other resources with information on 3F5X

Community annotation for 3F5X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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