3G5B	Apoptosis	date	Feb 04, 2009
title	The Structure Of Unc5b Cytoplasmic Domain
authors	R.Wang, Z.Wei, M.Zhang
compound		source
Molecule: Netrin Receptor Unc5b Chain: A Fragment: Unp Residues 541-945 Synonym: Protein Unc-5 Homolog B, Unc-5 Homolog 2 Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Unc5b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet32
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.243 62.710 118.110 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Autoinhibition of UNC5b revealed by the cytoplasmic domain structure of the receptor., Wang R, Wei Z, Jin H, Wu H, Yu C, Wen W, Chan LN, Wen Z, Zhang M, Mol Cell. 2009 Mar 27;33(6):692-703. PMID:19328064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (3g5b.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 3G5B CSU: Contacts of Structural Units for 3G5B Likely Quarternary Molecular Structure file(s) for 3G5B Structure Factors (1166 Kb) Retrieve 3G5B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G5B from S2C, [Save to disk] Re-refined 3g5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G5B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G5B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G5B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g5b_A] [3g5b] SWISS-PROT database: [O08722] Domain organization of [UNC5B_RAT] by SWISSPFAM Domains found in 3G5B: [DEATH] [ZU5 ] by SMART

Other resources with information on 3G5B

Community annotation for 3G5B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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