3G5V	Immune System	date	Feb 05, 2009
title	Antibodies Specifically Targeting A Locally Misfolded Region Associated Egfr
authors	T.P.J.Garrett, A.W.Burgess, T.Huyton, Y.Xu
compound		source
Molecule: 806 Light Chain Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
Molecule: 808 Heavy Chain Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
Molecule: Epidermal Growth Factor Receptor Peptide Chain: C Engineered: Yes		Synthetic: Yes Other_details: Peptide Synthesis
symmetry	Space Group: P 1 21 1	R_factor 0.226 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.925 83.161 72.214 90.00 92.43 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ACT, FMT, GOL	enzyme
Primary reference	Antibodies specifically targeting a locally misfolded region of tumor associated EGFR., Garrett TP, Burgess AW, Gan HK, Luwor RB, Cartwright G, Walker F, Orchard SG, Clayton AH, Nice EC, Rothacker J, Catimel B, Cavenee WK, Old LJ, Stockert E, Ritter G, Adams TE, Hoyne PA, Wittrup D, Chao G, Cochran JR, Luo C, Lou M, Huyton T, Xu Y, Fairlie WD, Yao S, Scott AM, Johns TG, Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5082-7. Epub 2009 Mar 16. PMID:19289842

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (3g5v.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 3G5V CSU: Contacts of Structural Units for 3G5V Structure Factors (417 Kb) Retrieve 3G5V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G5V from S2C, [Save to disk] Re-refined 3g5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G5V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G5V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G5V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g5v] [3g5v_C] [3g5v_B] [3g5v_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3G5V: [IG_like] [IGv ] by SMART

Other resources with information on 3G5V

Community annotation for 3G5V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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