3LMK Signaling Protein date Jan 30, 2010
title Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mgl Complexed With Glutamate
authors E.Dobrovetsky, G.Khutoreskaya, A.Seitova, D.Cossar, A.M.Edwards, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.Bochkarev, Structural G Consortium (Sgc)
compound source
Molecule: Metabotropic Glutamate Receptor 5
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Mglur5
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gprc1e, Grm5, Mglur5
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_cell: Sf9 Insect Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfhmsp-Lic-C
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.875 98.346 155.239 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand GLU, MG, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3lmk.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 3LMK
  • CSU: Contacts of Structural Units for 3LMK
  • Structure Factors (620 Kb)
  • Retrieve 3LMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMK from S2C, [Save to disk]
  • Re-refined 3lmk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LMK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LMK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lmk_A] [3lmk_B] [3lmk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LMK
  • Community annotation for 3LMK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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