3N6V Transport Protein date May 26, 2010
title Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
authors M.Rossmann, M.Sukumaran, I.H.Greger
compound source
Molecule: Glutamate Receptor 2
Chain: A, B, C, D, E, F
Fragment: N-Terminal Domain
Synonym: Glua2 Ampa-Receptor, Glur-2, Glur-B, Glur-K2, Glut Receptor Ionotropic, Ampa 2, Glua2, Ampa-Selective Glutamat 2;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gria2, Glur2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Triex
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.210 120.150 360.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceSubunit-selective N-terminal domain associations organize the formation of AMPA receptor heteromers., Rossmann M, Sukumaran M, Penn AC, Veprintsev DB, Babu MM, Greger IH, EMBO J. 2011 Mar 2;30(5):959-71. Epub 2011 Feb 11. PMID:21317873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (3n6v.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (3n6v.pdb2.gz) 117 Kb
  • Biological Unit Coordinates (3n6v.pdb3.gz) 112 Kb
  • CSU: Contacts of Structural Units for 3N6V
  • Structure Factors (2459 Kb)
  • Retrieve 3N6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N6V from S2C, [Save to disk]
  • Re-refined 3n6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3N6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3N6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N6V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n6v_A] [3n6v] [3n6v_D] [3n6v_E] [3n6v_C] [3n6v_F] [3n6v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3N6V
  • Community annotation for 3N6V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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