3NND Transport Protein date Jun 23, 2010
title The Crystal Structure Of Abc Transporter From Rhodopseudomon Palustris
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Possible Substrate Binding Protein Of Abc Transpo System;
Chain: B, A, C, D
Engineered: Yes
 Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Gene: Rpa4397
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Codon+Ril Stratagene
symmetry Space Group: P 1 21 1
R_factor 0.244 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.742 118.427 93.464 90.00 106.87 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (3nnd.pdb1.gz) 201 Kb
  • Biological Unit Coordinates (3nnd.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (3nnd.pdb3.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3NND
  • CSU: Contacts of Structural Units for 3NND
  • Structure Factors (3053 Kb)
  • Retrieve 3NND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NND from S2C, [Save to disk]
  • Re-refined 3nnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NND
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NND, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nnd_B] [3nnd_D] [3nnd_A] [3nnd] [3nnd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NND
  • Community annotation for 3NND at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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