3NZG Isomerase date Jul 16, 2010
title Crystal Structure Of A Putative Racemase With Mg Ion
authors S.Eswaramoorthy, E.Raparia, S.K.Burley, S.Swaminathan, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Putative Racemase
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pseudovibrio Sp. Je062
Organism_taxid: 439495
Gene: Pje062_745
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc - Psgx3 (Bc)
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.144 165.408 165.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, MG, MSE enzyme
Gene PJE062
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (3nzg.pdb1.gz) 474 Kb
  • LPC: Ligand-Protein Contacts for 3NZG
  • CSU: Contacts of Structural Units for 3NZG
  • Structure Factors (798 Kb)
  • Retrieve 3NZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NZG from S2C, [Save to disk]
  • Re-refined 3nzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NZG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NZG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nzg] [3nzg_A] [3nzg_C] [3nzg_D] [3nzg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NZG
  • Community annotation for 3NZG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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