3OY3 Transferase Transferase Inhibitor date Sep 22, 2010
title Crystal Structure Of Abl T315i Mutant Kinase Domain Bound Wi Out Inhibitor Ap24589
authors T.Zhou, L.Commodore, W.S.Huang, Y.Wang, M.Thomas, J.Keats, Q.Xu, V. W.C.Shakespeare, T.Clackson, D.C.Dalgarno, X.Zhu
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A, B
Fragment: Unp Residues 229-511
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, Oncogene C-Abl, P150;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Abl1, Abl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.471 59.988 89.439 90.00 97.97 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand XY3 BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Mechanism of the Pan-BCR-ABL Inhibitor Ponatinib (AP24534): Lessons for Overcoming Kinase Inhibitor Resistance., Zhou T, Commodore L, Huang WS, Wang Y, Thomas M, Keats J, Xu Q, Rivera VM, Shakespeare WC, Clackson T, Dalgarno DC, Zhu X, Chem Biol Drug Des. 2011 Jan;77(1):1-11. doi:, 10.1111/j.1747-0285.2010.01054.x. Epub 2010 Nov 30. PMID:21118377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3oy3.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3oy3.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3OY3
  • CSU: Contacts of Structural Units for 3OY3
  • Structure Factors (654 Kb)
  • Retrieve 3OY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OY3 from S2C, [Save to disk]
  • Re-refined 3oy3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OY3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OY3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oy3_B] [3oy3_A] [3oy3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OY3: [TyrKc ] by SMART
    • Other resources with information on 3OY3
  • Community annotation for 3OY3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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