3P8Z	Transferase Transferase Inhibitor	date	Oct 15, 2010
title	Dengue Methyltransferase Bound To A Sam-Based Inhibitor
authors	C.G.Noble, L.J.Yap, J.Lescar
compound		source
Molecule: Non-Structural Protein 5 Chain: A, C Fragment: Methyltransferase Synonym: Mtase Ec: 2.1.1.56, 2.1.1.57 Engineered: Yes		Organism_scientific: Dengue Virus 3 Organism_taxid: 11069 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Gex6p1
symmetry	Space Group: P 2 21 21	R_factor 0.197 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.811 61.095 184.683 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	36A, SAH	enzyme	Transferase E.C.2.1.1.56 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Small molecule inhibitors that selectively block dengue virus methyltransferase., Lim SP, Sonntag LS, Noble C, Nilar SH, Ng RH, Zou G, Monaghan P, Chung KY, Dong H, Liu B, Bodenreider C, Lee G, Ding M, Chan WL, Wang G, Jian YL, Chao AT, Lescar J, Yin Z, Vedananda TR, Keller TH, Shi PY, J Biol Chem. 2011 Feb 25;286(8):6233-40. Epub 2010 Dec 8. PMID:21147775

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (3p8z.pdb1.gz) 50 Kb Biological Unit Coordinates (3p8z.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 3P8Z CSU: Contacts of Structural Units for 3P8Z Structure Factors (951 Kb) Retrieve 3P8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P8Z from S2C, [Save to disk] Re-refined 3p8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P8Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P8Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p8z_C] [3p8z] [3p8z_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3P8Z

Community annotation for 3P8Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---