3PZU Hydrolase date Dec 14, 2010
title P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From Bac Subtilis 168
authors C.R.Santos, J.H.Paiva, P.K.Akao, A.N.Meza, J.C.Silva, F.M.Squina, R.Ruller, M.T.Murakami
compound source
Molecule: Endoglucanase
Chain: A, B
Fragment: Catalytic Domain, Unp Residues 27-332
Synonym: Carboxymethyl-Cellulase, Cmcase, Cellulase, Endo-1 Glucanase;
Ec: 3.2.1.4
Engineered: Yes
 Organism_scientific: Bacillus Subtilis Subsp. Subtilis
Organism_taxid: 224308
Strain: 168
Gene: Egls, Bglc, Gld, Bsu18130
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.242 110.762 121.379 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168., Santos C, Paiva J, Sforca M, Neves J, Navarro R, Cota J, Akao P, Hoffmam ZB, Meza A, Smetana J, Nogueira M, Polikarpov I, Xavier-Neto J, Squina F, Ward RJ, Ruller R, Zeri A, Murakami MT, Biochem J. 2011 Sep 1. PMID:21880019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3pzu.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3pzu.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3PZU
  • CSU: Contacts of Structural Units for 3PZU
  • Structure Factors (583 Kb)
  • Retrieve 3PZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PZU from S2C, [Save to disk]
  • Re-refined 3pzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PZU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PZU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pzu_B] [3pzu_A] [3pzu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PZU
  • Community annotation for 3PZU at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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