3SJ5 Signaling Protein date Jun 20, 2011
title I5f Mutant Structure Of T. Tengcongensis H-Nox
authors E.E.Weinert, C.M.Phillips-Piro, R.Tran, R.A.Mathies, M.A.Marlett
compound source
Molecule: Methyl-Accepting Chemotaxis Protein
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Caldanaerobacter Subterraneus
Organism_taxid: 119072
Strain: Subsp. Tengcongensis
Gene: Tar4, Tte0680
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rp523
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.585 67.116 66.428 90.00 92.01 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceControlling Conformational Flexibility of an O(2)-Binding H-NOX Domain., Weinert EE, Phillips-Piro CM, Tran R, Mathies RA, Marletta MA, Biochemistry. 2011 Jul 15. PMID:21721586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (3sj5.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3sj5.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3SJ5
  • CSU: Contacts of Structural Units for 3SJ5
  • Structure Factors (555 Kb)
  • Retrieve 3SJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SJ5 from S2C, [Save to disk]
  • Re-refined 3sj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SJ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SJ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sj5_B] [3sj5] [3sj5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SJ5
  • Community annotation for 3SJ5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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