3SOW	Ligase	date	Jun 30, 2011
title	Structure Of Uhrf1 Phd Finger In Complex With Histone H3k4me Peptide
authors	E.Rajakumara, D.J.Patel
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: A, B Fragment: Uhrf1 (Unp Residues 298-367) Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda, Nucl Protein 95, Nuclear Zinc Finger Protein Np95, Hunp95, Ring Protein 106, Transcription Factor Icbp90, Ubiquitin-Like Ph Finger Domain-Containing Protein 1, Ubiquitin-Like-Containi Ring Finger Domains Protein 1; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Icbp90, Np95, Rnf106, Uhrf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
Molecule: Histone H3 Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: Chemically Synthesized
symmetry	Space Group: P 43 21 2	R_factor 0.203 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.622 42.622 183.489 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	M3L, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression., Rajakumara E, Wang Z, Ma H, Hu L, Chen H, Lin Y, Guo R, Wu F, Li H, Lan F, Shi YG, Xu Y, Patel DJ, Shi Y, Mol Cell. 2011 Jul 22;43(2):275-84. PMID:21777816

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (3sow.pdb1.gz) 13 Kb Biological Unit Coordinates (3sow.pdb2.gz) 13 Kb Biological Unit Coordinates (3sow.pdb3.gz) 24 Kb LPC: Ligand-Protein Contacts for 3SOW CSU: Contacts of Structural Units for 3SOW Structure Factors (162 Kb) Retrieve 3SOW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SOW from S2C, [Save to disk] Re-refined 3sow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SOW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SOW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SOW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sow_A] [3sow] [3sow_B] [3sow_C] [3sow_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3SOW: [PHD] [RING ] by SMART

Other resources with information on 3SOW

Community annotation for 3SOW at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---