3THV	Transferase Dna	date	Aug 19, 2011
title	Crystal Structure Of Bacillus Dna Polymerase I Large Fragmen Dna And Ddatp-Dt In Closed Conformation
authors	W.Wang, L.S.Beese
compound		source
Molecule: Dna Polymerase I Chain: A, D Fragment: Bacillus Fragment (Unp Residues 285-876) Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Organism_taxid: 129337 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
Molecule: 5'-D(Cpcptpgpapcptpcp(2da))-3' Chain: B, E Engineered: Yes Other_details: Primer Strand		Synthetic: Yes
Molecule: 5'-D(Captptptpgpapgptpcpapgpg)-3' Chain: C, F Engineered: Yes Other_details: Template Strand		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.810 109.270 150.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.61 Å
ligand	2DA, DDS, MG, SO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, D
Primary reference	Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis., Wang W, Hellinga HW, Beese LS, Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17644-8. Epub 2011 Oct 17. PMID:22006298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (426 Kb) [Save to disk] Biological Unit Coordinates (3thv.pdb1.gz) 208 Kb Biological Unit Coordinates (3thv.pdb2.gz) 214 Kb LPC: Ligand-Protein Contacts for 3THV CSU: Contacts of Structural Units for 3THV Structure Factors (1407 Kb) Retrieve 3THV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3THV from S2C, [Save to disk] Re-refined 3thv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3THV

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3THV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3thv] [3thv_E] [3thv_F] [3thv_B] [3thv_C] [3thv_D] [3thv_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3THV: [35EXOc] [POLAc ] by SMART

Other resources with information on 3THV

Community annotation for 3THV at PDBWiki (http://pdbwiki.org)

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