3UED Cell Cycle date Oct 30, 2011
title Crystal Structure Of Human Survivin Bound To Histone H3 Phos On Threonine-3 (C2 Space Group).
authors E.Niedzialkowska, P.J.Porebski, F.Wang, J.M.Higgins, P.T.Stukenb W.Minor
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 5
Chain: A, C
Synonym: Apoptosis Inhibitor 4, Apoptosis Inhibitor Survivi
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Api4, Birc5, Iap4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P8his

Molecule: N-Terminal Fragment Of Histone H3
Chain: B, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.415 71.276 83.136 90.00 129.91 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceMolecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogs at inner centromeres., Niedzialkowska E, Wang F, Porebski PJ, Minor W, Higgins JM, Stukenberg PT, Mol Biol Cell. 2012 Feb 22. PMID:22357620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3ued.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3UED
  • CSU: Contacts of Structural Units for 3UED
  • Structure Factors (374 Kb)
  • Retrieve 3UED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UED from S2C, [Save to disk]
  • Re-refined 3ued structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UED
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UED, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ued] [3ued_C] [3ued_B] [3ued_A] [3ued_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UED: [BIR ] by SMART
  • Other resources with information on 3UED
  • Community annotation for 3UED at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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