3V6J	Transferase Dna	date	Dec 19, 2011
title	Replication Of N2,3-Ethenoguanine By Dna Polymerases
authors	L.Zhao
compound		source
Molecule: Dna Polymerase Iv Chain: A, J Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus P2 Organism_taxid: 273057 Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2 Gene: Dbh, Dpo4, Sso2448 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 Gold (De3) Expression_system_vector_type: Plasmid
Molecule: Dna (5'-D(Gpgpgpgpapapgpgpaptptp(Doc) Chain: P, K Engineered: Yes Other_details: Primer		Synthetic: Yes Other_details: Based On Previously Crystallization Sequence
Molecule: Dna (5'-D(Tpcpaptp(Efg) Pgpapaptpcpcptptpcpcpcpc)-3'); Chain: B, M Engineered: Yes Other_details: Template		Synthetic: Yes Other_details: Based On Previously Crystallization Sequence
symmetry	Space Group: P 1 21 1	R_factor 0.210 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.700 111.419 98.807 90.00 102.57 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	DCP, DOC, EFG, MG	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, J
Primary reference	Replication of N(2) ,3-Ethenoguanine by DNA Polymerases., Zhao L, Christov PP, Kozekov ID, Pence MG, Pallan PS, Rizzo CJ, Egli M, Guengerich FP, Angew Chem Int Ed Engl. 2012 Apr 4. doi: 10.1002/anie.201109004. PMID:22488769

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk] Biological Unit Coordinates (3v6j.pdb1.gz) 142 Kb Biological Unit Coordinates (3v6j.pdb2.gz) 138 Kb LPC: Ligand-Protein Contacts for 3V6J CSU: Contacts of Structural Units for 3V6J Structure Factors (729 Kb) Retrieve 3V6J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V6J from S2C, [Save to disk] Re-refined 3v6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V6J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V6J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V6J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v6j_K] [3v6j_A] [3v6j_B] [3v6j_J] [3v6j] [3v6j_P] [3v6j_M] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3V6J

Community annotation for 3V6J at PDBWiki (http://pdbwiki.org)

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