461D Dna date Mar 12, 1999
title A "Hydrat-Ion Spine" In A B-Dna Minor Groove
authors V.Tereshko, G.Minasov, M.Egli
compound source
Molecule: Dna (5'-D(Cpgpcpgpapap(Taf)Ptpcpgpcpg
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.070 39.720 65.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MG, RB, TAF enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (461d.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 461D
  • CSU: Contacts of Structural Units for 461D
  • Likely Quarternary Molecular Structure file(s) for 461D
  • Structure Factors (96 Kb)
  • Retrieve 461D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 461D from S2C, [Save to disk]
  • Re-refined 461d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 461D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 461D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 461D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [461d_A] [461d_B] [461d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 461D
  • Community annotation for 461D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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