4EGA Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor Chem 1320 date
authors Koh, C.Y., Kim, J.E., Shibata, S., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.
compound source
symmetry
R_factor
R_Free 0.22762
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand 0P8, CAS, DMS, GOL, MET, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinct States of Methionyl-tRNA Synthetase Indicate Inhibitor Binding by Conformational Selection., Koh CY, Kim JE, Shibata S, Ranade RM, Yu M, Liu J, Gillespie JR, Buckner FS, Verlinde CL, Fan E, Hol WG, Structure. 2012 Aug 14. PMID:22902861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • Biological Unit Coordinates (4ega.pdb1.gz) 177 Kb
  • Biological Unit Coordinates (4ega.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 4EGA
  • CSU: Contacts of Structural Units for 4EGA
  • Structure Factors (1246 Kb)
  • Retrieve 4EGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGA from S2C, [Save to disk]
  • Re-refined 4ega structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EGA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EGA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ega_A] [4ega] [4ega_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EGA
  • Community annotation for 4EGA at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science