4G17 Crystal structure of ck1g3 with 2-[(4-TERT-BUTYLPHENYL)AMINO]-1H-BENZIMIDAZOLE-6-CARBONITRILE date 2012-07-10
authors Huang, X.
compound source
symmetry
R_factor
R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 0VN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference2-Phenylamino-6-cyano-1H-benzimidazole-based isoform selective casein kinase 1 gamma (CK1gamma) inhibitors., Hua Z, Huang X, Bregman H, Chakka N, DiMauro EF, Doherty EM, Goldstein J, Gunaydin H, Huang H, Mercede S, Newcomb J, Patel VF, Turci SM, Yan J, Wilson C, Martin MW, Bioorg Med Chem Lett. 2012 Sep 1;22(17):5392-5. doi: 10.1016/j.bmcl.2012.07.046. , Epub 2012 Jul 20. PMID:22877629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (4g17.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4G17
  • CSU: Contacts of Structural Units for 4G17
  • Structure Factors (607 Kb)
  • Retrieve 4G17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G17 from S2C, [Save to disk]
  • Re-refined 4g17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G17
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G17, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g17_A] [4g17]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G17: [STYKc ] by SMART
  • Other resources with information on 4G17
  • Community annotation for 4G17 at PDBWiki (http://pdbwiki.org)

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